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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111865869_111877309_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111865869 - 111877309
Intron Length:
11441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCTTGTTACA
Flanking Amino Acid:
NYTKVEQLCSGAAYCQFMDM
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
88.4
0.86
0.8
83.5
31.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
47.3
-0.2
2.2
67.8
38.6

Associated Gene:

Gene:
MAPRE2
Ensembl Gene ID:
ENSAPLG00000016320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017030
111840435 - 111895557
55123