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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111877438_111895438_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111877438 - 111895438
Intron Length:
18001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
ATGTCAAAAATA
Flanking Amino Acid:
KHTVRGERSYSWGMAVNVYS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
88.7
0.87
0.6
89.2
19.8
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
45.3
-0.3
2.1
59.82
40.2

Associated Gene:

Gene:
MAPRE2
Ensembl Gene ID:
ENSAPLG00000016320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017030
111840435 - 111895557
55123