About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1119092_1122066_R

Intron Information:

Intron Rank:
133001
Intron Class:
major
Intron Phase:
Intron Coordinates:
1119092 - 1122066
Intron Length:
2975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ATTTCCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.6
0.69
0.8
73.8
36.5
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
62.8
0.4
1.9
78.97
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018775
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028488
1119017 - 1122087
3071