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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111951726_111959143_R

Intron Information:

Intron Rank:
131740
Intron Class:
major
Intron Phase:
Intron Coordinates:
111951726 - 111959143
Intron Length:
7418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AAAAATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
58.7
0.35
1.5
70.76
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018072
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035867
111951502 - 111963671
12170