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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111959223_111962547_R

Intron Information:

Intron Rank:
131741
Intron Class:
major
Intron Phase:
Intron Coordinates:
111959223 - 111962547
Intron Length:
3325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTACT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AAATCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.1
80.5
33.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.9
0.49
0.9
65.2
40.1
Minor 5ss
38.5
-1.3
2.8
52.3
44.3
Minor BPS
59.8
0.3
1.7
67.8
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018072
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035867
111951502 - 111963671
12170