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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111975589_111976335_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111975589 - 111976335
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTAAC
5'SS Class:
major
3'SS Sequence:
TAATTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGAATA
Flanking Amino Acid:
AAATGSMRSDMVTEDGDPFV
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
70.4
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.2
0.52
0.9
70.7
40.6
Minor 5ss
31.6
-2.1
3
40.2
39.3
Minor BPS
57.4
0.23
1.7
70.54
35.1

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525
ENSAPLT00000036959
111972270 - 112155397
183128