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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111976505_111977199_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111976505 - 111977199
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTTTGCTTCACA
Flanking Amino Acid:
MSSLVKELNSEVGSETESNV
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85.2
0.79
0.8
80
32.1
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
65.3
0.48
2.2
83.03
38.2

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039305
111967582 - 112061106
93525
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525