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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111985505_111988816_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111985505 - 111988816
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TAAACTCTGATC
Flanking Amino Acid:
PTLLAELRLLRQRKDELEQR
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
79
0.72
1
69
38.9
Major PPT
78.9
0.65
0.9
76.2
37.8
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
47.7
-0.2
1.6
56.64
35.6

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039305
111967582 - 112061106
93525
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525