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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111990386_111992386_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111990386 - 111992386
Intron Length:
2001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
CCCTCCTCAGCA
Flanking Amino Acid:
ARLAAETSSSQQQQGQQRGA
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
49.9
-0
1.9
59.11
46.7

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525