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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_111992475_112007658_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
111992475 - 112007658
Intron Length:
15184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACACCCCGAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CTCCCCTCCACA
Flanking Amino Acid:
VPSGSPFANRSVLDSASRLD
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
53.9
0.09
1
48
34.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
48.4
-0.1
2
60.78
45.1

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016713
111967582 - 112061106
93525