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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112015693_112018319_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112015693 - 112018319
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAA
U12 Branch Point Sequence:
TTCGGGTTAAAG
Flanking Amino Acid:
LLHRLANVENVFHPVECSYC
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
57.4
0.19
1.3
61.7
43.1
Major PPT
72.7
0.51
0.9
68.2
31.9
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
42.2
-0.7
2.5
51.73
48.5

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525