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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112023409_112024931_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112023409 - 112024931
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTTTCTTGTCT
Flanking Amino Acid:
CGGKIMDKLRYIFSMISDSS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
62
0.3
1
53
34.1
Major PPT
88
0.85
0.6
85.7
21.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
52.8
0.17
3.5
90.53
33.5

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525
ENSAPLT00000036959
111972270 - 112155397
183128