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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112025018_112032233_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112025018 - 112032233
Intron Length:
7216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TACTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TACTTTTGAACA
Flanking Amino Acid:
LLNFLLAAFDPEGHGKISVF
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
64
47.6
Major BPS
64.7
0.37
1
73
31.5
Major PPT
72.2
0.5
1
69.2
40.4
Minor 5ss
39.7
-1.2
3
55
42.3
Minor BPS
62.6
0.39
1.4
68.7
37.7

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525