About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112032448_112055837_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112032448 - 112055837
Intron Length:
23390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGCTGTCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTCCCCCTGACT
Flanking Amino Acid:
KLRFVQKKCNLHLVDIWNVI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
66.9
0.38
0.9
58.4
38.4
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
58.1
0.34
1.7
74.82
41.5

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039305
111967582 - 112061106
93525
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525