About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112055919_112061038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112055919 - 112061038
Intron Length:
5120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TATTCCATACAA
Flanking Amino Acid:
AERRQLFAEMRAQDLDRIRL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
72.9
0.51
0.8
67.3
33.9
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
53.4
0.1
2
71.22
40.2

Associated Gene:

Gene:
DTNA
Ensembl Gene ID:
ENSAPLG00000015988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036959
111972270 - 112155397
183128
ENSAPLT00000016713
111967582 - 112061106
93525
ENSAPLT00000039305
111967582 - 112061106
93525