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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112182521_112184370_F

Intron Information:

Intron Rank:
130151
Intron Class:
major
Intron Phase:
Intron Coordinates:
112182521 - 112184370
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.5
0.73
0.8
78
35.4
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
52.8
0.16
2.1
79.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032396
112181092 - 112184535
3444