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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1122187_1122422_R

Intron Information:

Intron Rank:
133003
Intron Class:
major
Intron Phase:
Intron Coordinates:
1122187 - 1122422
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCCTA
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTGCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
65
42.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
41.5
-0.9
3.1
56.1
48
Minor BPS
65.2
0.46
1.9
79.19
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018775
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034382
1111629 - 1122595
10967