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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112299822_112302644_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112299822 - 112302644
Intron Length:
2823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TTATTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCTTATATAATA
Flanking Amino Acid:
MNPWISETYAFLPR
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
55.1
0.16
1.8
68.87
37.8

Associated Gene:

Gene:
NOL4
Ensembl Gene ID:
ENSAPLG00000006341
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019073
112299098 - 112437298
138201