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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11232821_11234634_F

Intron Information:

Intron Rank:
135803
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
11232821 - 11234634
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTAAATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGTTGCTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
49.1
-0
1.7
56.2
42.7
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
52
-0
2.1
63.65
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017471
11232527 - 11242350
9824