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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11234769_11241301_F

Intron Information:

Intron Rank:
135804
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
11234769 - 11241301
Intron Length:
6533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTTCTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
GTGAGCAAATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
53.3
0.08
1.1
59
36
Major PPT
57.5
0.17
1.7
69.3
41.8
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
35.6
-1.1
2.2
44.53
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017471
11232527 - 11242350
9824