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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112401035_112412570_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112401035 - 112412570
Intron Length:
11536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTCTTTCATA
Flanking Amino Acid:
RRMKRSGFEMSRPIPSHLTS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83
0.74
0.7
79.6
26
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
64.2
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
NOL4
Ensembl Gene ID:
ENSAPLG00000006341
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026933
112400843 - 112449459
48617