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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112469599_112475381_R

Intron Information:

Intron Rank:
134802
Intron Class:
major
Intron Phase:
Intron Coordinates:
112469599 - 112475381
Intron Length:
5783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.9
0.54
0.9
67
39.5
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
64.7
0.44
1.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036571
112469581 - 112476662
7082
ENSAPLT00000027407
112468716 - 112476622
7907
ENSAPLT00000024575
112468716 - 112483528
14813