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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112511899_112517678_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112511899 - 112517678
Intron Length:
5780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GCCTTTTTAATT
Flanking Amino Acid:
EKFFERFYGEKLGMSRGESM
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.8
81.8
29
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
65.9
0.58
1.2
71.21
40.9

Associated Gene:

Gene:
ASXL3
Ensembl Gene ID:
ENSAPLG00000006441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036415
112503586 - 112602504
98919
ENSAPLT00000017890
112503586 - 112555607
52022
ENSAPLT00000006684
112503586 - 112560490
56905
ENSAPLT00000046340
112503586 - 112563435
59850