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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112542481_112546605_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112542481 - 112546605
Intron Length:
4125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTATTCACT
Flanking Amino Acid:
HLKRLKKSGLGHLKWTKAED
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.9
0.67
0.9
71.4
39.2
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
58.3
0.34
2
81.55
39.8

Associated Gene:

Gene:
ASXL3
Ensembl Gene ID:
ENSAPLG00000006441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036415
112503586 - 112602504
98919
ENSAPLT00000017890
112503586 - 112555607
52022
ENSAPLT00000006684
112503586 - 112560490
56905
ENSAPLT00000046340
112503586 - 112563435
59850