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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112546726_112547659_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112546726 - 112547659
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GGTGTTTTATTT
Flanking Amino Acid:
VSDEQSDSPSGSESKNGEAD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.9
0.56
1
80.1
31.6
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
49.2
0.02
1.6
64.27
41

Associated Gene:

Gene:
ASXL3
Ensembl Gene ID:
ENSAPLG00000006441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036415
112503586 - 112602504
98919
ENSAPLT00000017890
112503586 - 112555607
52022
ENSAPLT00000006684
112503586 - 112560490
56905
ENSAPLT00000046340
112503586 - 112563435
59850