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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112555608_112560394_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
112555608 - 112560394
Intron Length:
4787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTGTGTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
55
0.14
2.2
69.02
43.1

Associated Gene:

Gene:
ASXL3
Ensembl Gene ID:
ENSAPLG00000006441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046340
112503586 - 112563435
59850
ENSAPLT00000036415
112503586 - 112602504
98919