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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112560517_112562887_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
112560517 - 112562887
Intron Length:
2371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.4
0.75
0.8
80.6
30.5
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
ASXL3
Ensembl Gene ID:
ENSAPLG00000006441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046340
112503586 - 112563435
59850