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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112602505_112606599_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
112602505 - 112606599
Intron Length:
4095

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCTGGACCA
5'SS Class:
weak_major
3'SS Sequence:
TATTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTCTTGACA
Flanking Amino Acid:
LSSVSAYCTVALEKYPNSPM
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
49.8
40.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90.8
0.92
0.7
89
27.5
Minor 5ss
17
-3.8
3.5
20.6
29.5
Minor BPS
79.9
0.93
1
82.96
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017722
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031545
112570621 - 112606659
36039