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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112649355_112651292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
112649355 - 112651292
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030580
112648873 - 112826943
178071