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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112659598_112661384_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112659598 - 112661384
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CGTTTATCAACC
Flanking Amino Acid:
YSKDSGEAPHGKNEWTTIRQ
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
61.8
44.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
40.1
-1.1
2.8
50.1
46.1
Minor BPS
51.5
0.03
1.8
64.33
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040682
112648873 - 112826943
178071
ENSAPLT00000038697
112659543 - 112826943
167401
ENSAPLT00000030580
112648873 - 112826943
178071