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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112681116_112687443_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112681116 - 112687443
Intron Length:
6328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
AAATATATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AATTACTTAATT
Flanking Amino Acid:
QEDAKCWNSKVEDMNNRVAA
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
62.9
0.29
1
52.8
45.6
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
74.5
0.85
1.4
85.04
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040682
112648873 - 112826943
178071
ENSAPLT00000038697
112659543 - 112826943
167401
ENSAPLT00000030580
112648873 - 112826943
178071