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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112687812_112691894_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112687812 - 112691894
Intron Length:
4083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTATTTTAACA
Flanking Amino Acid:
NEELLQEFRDSSRKKKLYQS
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.8
0.63
1
73.4
40.7
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040682
112648873 - 112826943
178071
ENSAPLT00000038697
112659543 - 112826943
167401
ENSAPLT00000030580
112648873 - 112826943
178071