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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112707772_112710259_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112707772 - 112710259
Intron Length:
2488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
ENTEKSFVDLRKNLSDVMYK
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.4
41.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
35.1
-1.7
3.2
50.8
45
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040682
112648873 - 112826943
178071
ENSAPLT00000038697
112659543 - 112826943
167401
ENSAPLT00000030580
112648873 - 112826943
178071