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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112808811_112826466_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112808811 - 112826466
Intron Length:
17656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTATTCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTATTCTAAACA
Flanking Amino Acid:
ENAQKILAVQGELSKAIQHI
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
70.2
0.45
1
66.5
38.4
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
63.5
0.42
1.7
71.36
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040682
112648873 - 112826943
178071
ENSAPLT00000038697
112659543 - 112826943
167401
ENSAPLT00000030580
112648873 - 112826943
178071