Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11281357_11290378_F

Intron Information:

Intron Rank:

124366

Intron Class:

major

Intron Phase:

Intron Coordinates:

11281357 - 11290378

Intron Length:

9022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGAAG

5'SS Class:

major

3'SS Sequence:

CCTCTCTTGTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

GGCTACTGAAGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

72.4

38.9

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

64.8

0.33

1.1

70.7

33.8

Minor 5ss

33.3

-1.9

3.2

39.9

40.1

Minor BPS

46.6

-0.2

1.9

55.02

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024922

11270162 - 11291206

21045