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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112897734_112913152_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
112897734 - 112913152
Intron Length:
15419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGGTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GGTTGTTCATCT
Flanking Amino Acid:
RQHCRQSLASRIRSNKKMLL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
59.7
0.22
1.2
59.8
45.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.5
-0.2
2.1
65.61
44.8

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684
ENSAPLT00000028033
112895398 - 112956535
61138
ENSAPLT00000006862
112895963 - 112956830
60868