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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112913275_112940344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112913275 - 112940344
Intron Length:
27070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
GTGCCCTGAGCT
Flanking Amino Acid:
DEKKTWKILTIMPYNSAHHC
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
79.7
0.67
0.9
72.9
37.4
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
54
0.2
1.8
71.77
44.3

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006862
112895963 - 112956830
60868
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684
ENSAPLT00000028033
112895398 - 112956535
61138