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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112940435_112944888_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112940435 - 112944888
Intron Length:
4454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTATCTTTACA
Flanking Amino Acid:
LGGEDQWNPNGKHSTNFVSR
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.8
0.8
0.8
79.8
32.1
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
61.9
0.37
1.7
71.53
40.4

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028033
112895398 - 112956535
61138
ENSAPLT00000006862
112895963 - 112956830
60868
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684