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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112952665_112952817_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112952665 - 112952817
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATTACTTAACA
Flanking Amino Acid:
AVHNGKIYISGGVHNGEYVP
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.9
89.8
22.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
22.3
-3.2
3.9
34.8
41.6
Minor BPS
73.4
0.73
1.5
77.82
38.5

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684
ENSAPLT00000028033
112895398 - 112956535
61138
ENSAPLT00000006862
112895963 - 112956830
60868