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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112952977_112955687_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112952977 - 112955687
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCACATTT
5'SS Class:
major
3'SS Sequence:
TGCCATTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTTCTCAATG
Flanking Amino Acid:
LYAIGGNHLKGFSHLDVMLV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.4
72.5
39.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.9
0.4
1
65.4
39.9
Minor 5ss
44.8
-0.6
3
65.8
45.3
Minor BPS
56.6
0.07
1.7
58.48
44.1

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684
ENSAPLT00000028033
112895398 - 112956535
61138
ENSAPLT00000006862
112895963 - 112956830
60868