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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112955846_112956341_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112955846 - 112956341
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTACC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
YLVGGYSWSMGAYKSSTICY
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.8
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.9
80.4
36.6
Minor 5ss
30.6
-2.2
2.8
34.3
35.1
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
KLHL14
Ensembl Gene ID:
ENSAPLG00000006602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043248
112895398 - 112956830
61433
ENSAPLT00000038978
112896799 - 112956482
59684
ENSAPLT00000028033
112895398 - 112956535
61138
ENSAPLT00000006862
112895963 - 112956830
60868