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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112989325_112994337_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112989325 - 112994337
Intron Length:
5013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
GTTACAAGAAAT
Flanking Amino Acid:
ACSSSYLATIGIDFKVKPIT
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
66.3
0.41
1
61
37.5
Major PPT
87.3
0.84
0.6
81.2
30.9
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
44.3
-0.3
2
67.04
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006964
112989180 - 113020044
30865