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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_112995719_113005178_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112995719 - 113005178
Intron Length:
9460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGACACTTACTA
Flanking Amino Acid:
ITSWMKDIHEKAGDEVDVIL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
0.9
77.4
36.9
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
48.9
-0
1.8
59.78
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006964
112989180 - 113020044
30865