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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113010652_113019382_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113010652 - 113019382
Intron Length:
8731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTATCTTAATT
Flanking Amino Acid:
SLLTKEILEKKSCVLYDLDV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
75.5
0.88
1.2
85.2
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006964
112989180 - 113020044
30865