About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113026458_113048862_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113026458 - 113048862
Intron Length:
22405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGTGTGGG
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTAATTAATT
Flanking Amino Acid:
RLPQLARLDSGETVEGLRES
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
56.2
42.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.5
0.73
0.9
76.7
36.8
Minor 5ss
33.2
-1.9
3.1
40
46.1
Minor BPS
59.5
0.38
1.8
76.79
39.6

Associated Gene:

Gene:
GAREM1
Ensembl Gene ID:
ENSAPLG00000006848
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007115
113026337 - 113122093
95757