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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113049004_113103077_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113049004 - 113103077
Intron Length:
54074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCTTACAACT
Flanking Amino Acid:
PKIEIPVHYAGQFKLLEQDR
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80
0.67
0.9
76.5
37.2
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
49.2
0.02
1.8
71.77
38.7

Associated Gene:

Gene:
GAREM1
Ensembl Gene ID:
ENSAPLG00000006848
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007115
113026337 - 113122093
95757