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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113111200_113111307_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113111200 - 113111307
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCCGTGAAG
Flanking Amino Acid:
RSPLEVQMQEGHRYKFVNIQ
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.4
0.39
1.1
68.5
37.5
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
50.3
-0.1
2.2
64.54
43.2

Associated Gene:

Gene:
GAREM1
Ensembl Gene ID:
ENSAPLG00000006848
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007115
113026337 - 113122093
95757