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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113138730_113139609_F

Intron Information:

Intron Rank:
124513
Intron Class:
major
Intron Phase:
Intron Coordinates:
113138730 - 113139609
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
64.6
0.45
1.8
78.12
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043148
113138001 - 113142431
4431