About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113146998_113149332_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113146998 - 113149332
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTCTTTTACT
Flanking Amino Acid:
CVIVDRKAVCRCPAGDNWWY
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
85.1
0.79
0.7
77.9
36.2
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
74.5
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047157
113146760 - 113167364
20605
ENSAPLT00000046460
113145867 - 113156573
10707