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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113147025_113150084_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113147025 - 113150084
Intron Length:
3060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TCTTTAAGTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATACCT
Flanking Amino Acid:
DTQCHILTSHSHAFVLLLSR
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
64.2
0.32
1.2
65.3
39.3
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
57.7
0.32
1.9
80.09
42.1

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007411
113145185 - 113167391
22207